Food Faith Fitness

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50 Healthy Muffin Recipes

Taylor Kiser

Get ready to indulge in guilt-free goodness with our collection of 50 Healthy Muffin Recipes! From banana nut to chocolate chip, these muffins are packed with flavor and nutrition.

Oatmeal Chocolate Chip Muffins

These Oatmeal-Chocolate Chip Muffins are a delicious way to start the day!

Nutrition

Calories: 261kcal | Carbohydrates: 31g | Protein: 4g | Fat: 13g | Saturated Fat: 4g | Sodium: 470mg | Fiber: 3g | Sugar: 11g
Low Carb Sugar Free Keto Blueberry Muffins with Almond Flour

Low Carb Sugar Free Keto Blueberry Muffins with Almond Flour

These Low Carb Sugar Free Keto Blueberry Muffins with Almond Flour are SO tender and moist! Hard to believe they are healthy and gluten free!

Healthy Oat Bran Muffins

These Healthy Oat Bran Muffins are easy, fluffy, and too good to pass up!

Nutrition

Calories: 175kcal | Carbohydrates: 25.7g | Protein: 3.6g | Fat: 8.1g | Saturated Fat: 5.8g | Sodium: 154mg | Fiber: 1.7g | Sugar: 16.3g

Whole30 Pumpkin Muffins

You'll never guess the secret ingredient that makes these Whole30 Pumpkin Muffins sugar-free!

Nutrition

Calories: 246kcal | Carbohydrates: 26g | Protein: 6g | Fat: 15g | Saturated Fat: 5g | Sodium: 305mg | Fiber: 6g | Sugar: 17g

Apple Banana Muffins

Two tasty fruits combine with cinnamon, honey, and vanilla flavors in this irresistible recipe for Apple Banana Muffins. They make the perfect breakfast on the go!

Nutrition

Calories: 196kcal | Carbohydrates: 26g | Protein: 2g | Fat: 10g | Saturated Fat: 1g | Sodium: 194mg | Fiber: 2g | Sugar: 10g

Healthy Whole Wheat Blueberry Muffins

Try out this easy recipe for Healthy Whole Wheat Blueberry Muffins, a wholesome portable breakfast or brunch dish!

Nutrition

Calories: 222kcal | Carbohydrates: 37g | Protein: 7g | Fat: 6g | Saturated Fat: 4g | Sodium: 139mg | Fiber: 4g | Sugar: 10g
Apple-cinnamon muffin with crumb topping and white glaze drizzle

Delicious Apple-Cinnamon Muffin Recipe

This Delicious Apple-Cinnamon Muffin Recipe mixes tender apples, cinnamon, and a streusel-like topping—the perfect fall treat!

Nutrition

Calories: 210kcal | Carbohydrates: 29g | Protein: 3g | Fat: 9g | Saturated Fat: 6g | Sodium: 156mg | Fiber: 1g | Sugar: 15g

Egg Muffins with Savory Oatmeal Vegetable Crust

Discover this easy recipe for Egg Muffins With Savory Oatmeal Crust. They're a healthy and gluten-free snack or breakfast for busy mornings!

Nutrition

Calories: 78kcal | Carbohydrates: 8g | Protein: 4g | Fat: 3g | Saturated Fat: 1g | Sodium: 362mg | Fiber: 1g | Sugar: 1g

Healthy Chocolate Chip Banana Muffins

These Healthy Chocolate Chip Banana Muffins are perfect for breakfast, snack time, or dessert!

Nutrition

Calories: 240kcal | Carbohydrates: 29g | Protein: 3.5g | Fat: 12.6g | Saturated Fat: 9.9g | Sodium: 227mg | Fiber: 3.1g | Sugar: 13.7g
High Protein Blueberry Quinoa Muffins - Naturally sweetened, gluten free, dairy free and packed with plant based protein and fiber! These muffins are quick and easy to make and great for kids lunchboxes or snacks! Adults love them too! | #Foodfaithfitness | #Glutenfree #Dairyfree #Proteinpowder #Healthy #Quinoa

Blueberry High Protein Muffins With Quinoa

These Blueberry High-Protein Muffins With Quinoa are gluten-free, naturally sweetened, and so quick and easy to make—perfect for a healthy on-the-go snack or wholesome breakfast!

Nutrition

Calories: 172kcal | Carbohydrates: 19g | Protein: 9g | Fat: 7g | Saturated Fat: 5g | Sodium: 112mg | Fiber: 2g | Sugar: 12g

Pumpkin Oatmeal Muffins

These Pumpkin-Oatmeal Muffins are perfect for an autumnal breakfast. Healthy, easy, and dairy/gluten-free!

Nutrition

Calories: 206kcal | Carbohydrates: 30g | Protein: 4g | Fat: 8g | Saturated Fat: 1g | Sodium: 330mg | Fiber: 3g | Sugar: 14g
Healthy Zucchini Bread Muffins - These dairy free Zucchini Muffins are fluffy and gluten, dairy, oil and sugar free! Sweetened with dates, studded with chocolate chips and only 170 calories! Great for kids and adults! | #Foodfaithfitness |

Healthy Gluten-Free Zucchini Muffins With Applesauce

Naturally sweet, lightly spiced, and studded with chocolate, these Healthy Gluten-Free Zucchini Muffins With Applesauce are a snack that checks all the boxes.

Nutrition

Calories: 164kcal | Carbohydrates: 29g | Protein: 4g | Fat: 4g | Saturated Fat: 1g | Sodium: 113mg | Fiber: 3g | Sugar: 15g
Almond, Cherry and Apricot Quinoa Muffins - These spicy-sweet, healthy quinoa muffins are packed with roasted cherries and apricots! They're an easy, portable breakfast or snack that's gluten free and kid friendly! | Foodfaithfitness.com | @FoodFaithFit

Healthy Gluten-Free Quinoa Muffins

These Healthy Gluten-Free Quinoa Muffins are packed with roasted cherries, apricots, and pistachios, and are finished with the perfect drizzle of almond butter!

Nutrition

Calories: 112kcal | Fat: 5.6g | Saturated Fat: 0.7g | Sodium: 48mg | Fiber: 1.6g | Sugar: 8g
Mediterranean Keto Low Carb Egg Muffins - These easy, healthy egg muffins have a little Mediterranean flair and are packed with protein! A portable, healthy and gluten free breakfast or snack that is keto friendly and low carb! | #Foodfaithfitness | #Glutenfree #Keto #Lowcarb #Breakfast #Healthy

Mediterranean Keto Egg Muffins With Ham

These egg muffins have a little Mediterranean flair and are packed with protein!

Nutrition

Calories: 189kcal | Carbohydrates: 2g | Protein: 15g | Fat: 13g | Saturated Fat: 5g | Sodium: 659mg | Fiber: 0.4g | Sugar: 1g
6 Ingredient Taco Egg Muffins - These 6-ingredient, kid-friendly taco breakfast egg muffins have all the Mexican taste without the carbs! They're an easy, healthy, gluten free and protein packed portable breakfast with only 105 calories! | Foodfaithfitness.com| @FoodFaithFit

Taco Breakfast Egg Muffins

These hearty egg muffins blend a taste of taco night with a quick and delicious breakfast that is great for grabbing on your way out the door!

Nutrition

Calories: 100kcal | Carbohydrates: 2g | Protein: 10g | Fat: 6g | Saturated Fat: 2g | Sodium: 248mg | Fiber: 0.3g | Sugar: 1g

Blackberry Muffins

Sweet and tangy are a perfect match in these Blackberry Muffins! Pops of color and fruitiness pair with a sugary, crackly top, for so much YUM!

Nutrition

Calories: 224kcal | Carbohydrates: 31.7g | Protein: 5g | Fat: 8.7g | Saturated Fat: 4.8g | Sodium: 289mg | Fiber: 3g | Sugar: 17g

Strawberry-Rhubarb Oatmeal Muffins

Looking for a wholesome afternoon snack or quick breakfast option? Whip up a batch of these tender and moist Strawberry-Rhubarb Oatmeal Muffins.

Nutrition

Calories: 123kcal | Carbohydrates: 25.9g | Protein: 3.8g | Fat: 1.4g | Saturated Fat: 0.2g | Sodium: 105.6mg | Fiber: 3.3g | Sugar: 13.7g
Gluten Free Paleo Pumpkin Muffins with Almond Flour

Gluten Free Paleo Pumpkin Muffins with Almond Flour

These easy, healthy Gluten Free Paleo Pumpkin Muffins with Almond Flour are SO spicy-sweet and FLUFFY! A yummy, fall breakfast or snack for kids and adults!
Sugar Free Gluten Free Oatmeal Carrot Muffins - These easy carrot muffins are naturally sweetened with dates and have a surprise, spicy-sweet kick! SO light and fluffy! Gluten free, healthy and tasty! | #Foodfaithfitness |

Sugar-Free, Gluten-Free Oatmeal-Carrot Muffins With Garam Masala

These easy Sugar-Free, Gluten-Free Oatmeal-Carrot Muffins With Garam Masala have a moist, tender crumb and are incredibly fragrant. They're a perfectly wholesome snack.

Nutrition

Calories: 176kcal | Carbohydrates: 34g | Protein: 4g | Fat: 3g | Saturated Fat: 1g | Sodium: 182mg | Fiber: 4g | Sugar: 17g

Healthy Chocolate Peanut Butter Muffins

These Healthy Chocolate Peanut Butter Muffins are packed with peanut butter chips and made a little more wholesome with whole-wheat flour and Greek yogurt!

Nutrition

Calories: 198.8kcal | Carbohydrates: 21.6g | Protein: 7.5g | Fat: 10.5g | Saturated Fat: 2.3g | Sodium: 128.5mg | Fiber: 3g | Sugar: 12.6g
Walnut Chocolate Chip Keto Low Carb Muffins - These healthy, sugar free muffins are loaded with chocolate chips and black walnuts and are SO moist and fluffy you won't believe they're gluten free, keto AND paleo! | #Foodfaithfitness | #Keto #Lowcarb #Glutenfree #Paleo #Grainfree

Black Walnut Chocolate Chip Keto Low-Carb Muffins With Almond Flour

Try these gluten-free, paleo, sugar-free Chocolate Chip Muffins, made with almond flour and loaded with chocolate chips and black walnuts.

Nutrition

Calories: 292kcal | Carbohydrates: 10.9g | Protein: 8.3g | Fat: 26.1g | Saturated Fat: 7.3g | Sodium: 219mg | Fiber: 5.8g | Sugar: 1.2g
one Zucchini Blueberry Muffins cut in half

Zucchini Blueberry Muffins

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Low-Carb Keto Zucchini Muffins With Almond Flour

Create your own moist and fluffy Low-Carb Zucchini Muffins With Almond Flour in just 40 minutes with this easy recipe.

Nutrition

Calories: 217kcal | Carbohydrates: 8.6g | Protein: 8.2g | Fat: 18.5g | Saturated Fat: 1.9g | Sodium: 221.1mg | Fiber: 4g | Sugar: 1.5g

Easy Healthy Gluten-Free Carrot Cake Muffins

These tasty gluten-free carrot cake muffins are quick, simple, and made from pantry-essential ingredients.

Nutrition

Calories: 150kcal | Carbohydrates: 25.7g | Protein: 3.6g | Fat: 4.6g | Saturated Fat: 0.6g | Sodium: 102.2mg | Fiber: 1.9g | Sugar: 17.4g

Low-Carb Keto Pumpkin Muffins With Almond Flour

These Low-Carb Keto Pumpkin Muffins are made with almond flour and are so moist and fluffy, you won't believe they're healthy!

Nutrition

Calories: 251kcal | Carbohydrates: 21g | Protein: 8g | Fat: 22g | Saturated Fat: 7.3g | Sodium: 450mg | Fiber: 4.6g | Sugar: 1.5g
Flourless Oatmeal Applesauce Almond Butter Muffins

Flourless Oatmeal Applesauce Almond Butter Muffins

These Flourless Oatmeal Applesauce Almond Butter Muffins are made with oats, almond butter and topped with coconut. Easy and gluten and dairy free!

Healthy Banana Muffins with Turmeric

These Healthy Banana Muffins With Turmeric are loaded with crunchy cacao nibs and made with no sugar or added fats!

Nutrition

Calories: 178kcal | Carbohydrates: 38.3g | Protein: 3.5g | Fat: 2.7g | Saturated Fat: 0.9g | Sodium: 109.8mg | Fiber: 5.2g | Sugar: 21.4g

Applesauce Muffins

Soft, perfectly domed, and full of flavor—these Applesauce Muffins are about to become your new favorite!

Nutrition

Calories: 189kcal | Carbohydrates: 32g | Protein: 3g | Fat: 6g | Saturated Fat: 1g | Sodium: 258mg | Fiber: 1g | Sugar: 15g

Oat Flour Chocolate Chip Muffins

These tasty Oat Flour Chocolate Chip Muffins are loaded with natural ingredients—the perfect snack for all ages!

Nutrition

Calories: 250kcal | Carbohydrates: 36g | Protein: 4.2g | Fat: 10.1g | Saturated Fat: 6.9g | Sodium: 130mg | Fiber: 2.1g | Sugar: 22g

Chocolate Chip Sweet Potato Muffins

Moist, rich, and sweet, this 35-minute recipe for Chocolate Chip Sweet Potato Muffins blends wholesome ingredients with unforgettable flavor!

Nutrition

Calories: 179kcal | Carbohydrates: 20g | Protein: 4g | Fat: 10g | Saturated Fat: 3g | Sodium: 147mg | Fiber: 2g | Sugar: 12g

Vegan Protein Muffins With Chai And Vanilla

These Vegan Protein Muffins With Chai And Vanilla are the perfect portable breakfast or healthy snack!

Nutrition

Calories: 207kcal | Carbohydrates: 26g | Protein: 7g | Fat: 9g | Saturated Fat: 6g | Sodium: 446mg | Fiber: 3g | Sugar: 11g
Gluten Free Lemon Blueberry Muffin Breakfast Casserole - This muffin gluten free breakfast casserole is a creative way to use your muffins, and is only 5 ingredients and 200 calories! Perfect for spring brunch or Mother's Day! | Foodfaithfitness.com | @FoodFaithFit

Lemon Muffin Gluten-Free Breakfast Casserole

This Lemon Muffin Gluten-Free Breakfast Casserole is a perfect recipe for a spring brunch or Mother's Day buffet!

Nutrition

Calories: 198kcal | Carbohydrates: 24.5g | Protein: 5g | Fat: 9g | Saturated Fat: 2.5g | Sodium: 248mg | Fiber: 0.75g | Sugar: 12.9g
Paleo Ham, Egg and Cauliflower Egg Muffins - A healthy. protein packed portable breakfast that is ready in under 30 mins! | Foodfaithfitness.com | @FoodFaithFit

Egg Muffins With Ham, Kale, And Cauliflower Rice {Paleo, High Protein + Super Simple}

This quick and easy recipe delivers a deliciously protein-packed handheld that takes low-carb, gluten-free nutrition on the go!

Nutrition

Calories: 79kcal | Carbohydrates: 1g | Protein: 7g | Fat: 5g | Saturated Fat: 2g | Sodium: 246mg | Fiber: 0.5g | Sugar: 0.4g
Paleo Chocolate Muffins with Tahini

Paleo Chocolate Muffins with Tahini

These gluten free Paleo Chocolate Muffins are sweetened with maple syrup and have a hint of tahini! They’re a healthy, easy breakfast for busy mornings!
Whole30 Spinach and Artichoke Egg Muffins - These easy, 6 ingredient paleo spinach breakfast egg muffins are low carb, gluten free, and under 100 calories! Perfect for busy mornings! | Foodfaithfitness.com | @FoodFaithFit

Spinach Breakfast Egg Muffins With Artichokes

These Spinach Breakfast Egg Muffins With Artichokes are under 100 calories a pop!

Nutrition

Calories: 78kcal | Carbohydrates: 1.9g | Protein: 8.7g | Fat: 3.8g | Saturated Fat: 1g | Sodium: 165.3mg | Fiber: 0.6g | Sugar: 0.4g
Mini Peanut Butter Muffins with Strawberries - These gluten and grain free muffins are made in the food processor and are ready in 15 minutes! Perfect for a healthy, portable, breakfast or snack! | Foodfaithfitness.com | @FoodFaithFit

Egg Muffin Recipe with Peanut Butter and Strawberries {Gluten Free, Vegetarian, High Protein + Super Simple}

This recipe for Egg Muffins With Peanut Butter And Strawberries tastes like a peanut butter and jelly sandwich!

Nutrition

Calories: 157kcal | Carbohydrates: 17.6g | Protein: 6.8g | Fat: 7.6g | Saturated Fat: 1.4g | Sodium: 90mg | Fiber: 2.1g | Sugar: 11g

Pumpkin-Oatmeal Muffins

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Vegan Pumpkin Muffins

These Vegan Pumpkin Muffins are perfectly spicy, subtly sweet, and made in one bowl! The ultimate treat on a rainy fall day—or any day!

Nutrition

Calories: 187kcal | Carbohydrates: 34g | Protein: 2.7g | Fat: 6.1g | Saturated Fat: 0.4g | Sodium: 350mg | Fiber: 2.4g | Sugar: 15.5g
Chocolate muffin

Healthy Double Chocolate Chip Muffins with Cream Cheese Filling

These whole-wheat Healthy Double Chocolate Chip Muffins are stuffed with cream cheese and are the perfect 150-calorie treat! 

Nutrition

Calories: 151kcal | Carbohydrates: 31g | Protein: 4g | Fat: 4g | Saturated Fat: 2g | Sodium: 191mg | Fiber: 3g | Sugar: 18g
Upside Down Citrus Gluten Free Muffins - These vegan muffins are made with coconut sugar, grapefruit and oranges! They're a healthy breakfast or snack for busy mornings that are only 200 calories! | Foodfaithfitness.com | @FoodFaithFit

Upside-Down Citrus Muffins

Try these bright and cozy Upside-Down Citrus Muffins for a naturally sweet, gluten-free treat that's perfect for brunch or a coffee date!

Nutrition

Calories: 204kcal | Carbohydrates: 33g | Protein: 4g | Fat: 7g | Saturated Fat: 4g | Sodium: 181mg | Fiber: 2g | Sugar: 12g
Dairy Free Vegan Carrot Muffins

Dairy Free Vegan Carrot Muffins

These Dairy Free Vegan Carrot Muffins are super fluffy, moist and tender! You will never believe they are healthy, gluten free and egg free!

Almond Flour Paleo Banana Nut Muffins With Chocolate Chips

These gluten-free and dairy-free muffins are fluffy, soft, and perfectly sweet!

Nutrition

Calories: 216kcal | Carbohydrates: 24g | Protein: 4g | Fat: 13g | Saturated Fat: 6g | Sodium: 183mg | Fiber: 4g | Sugar: 17g
Buffalo Chicken Egg Muffin Recipe

Buffalo Chicken Egg Muffin Recipe

This egg muffin recipe has all the buffalo chicken taste you love in a super easy and healthy, portable breakfast! Perfect for busy, on-the-go mornings!

Gluten-Free Gingerbread Cake Bars

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Gluten-Free, Paleo Lemon Poppy Seed Muffins

These Gluten-Free, Paleo Lemon Poppy Seed Muffins are light, fluffy, and perfectly sweet.

Nutrition

Calories: 319kcal | Carbohydrates: 31.4g | Protein: 8.8g | Fat: 20.4g | Saturated Fat: 4.1g | Sodium: 297.3mg | Fiber: 4.9g | Sugar: 22.3g
Healthy Gluten Free Chocolate Pumpkin Muffins - SO moist and chewy! Made with whole grains, dairy free, low fat, only 140 calories!  Perfect for breakfast or snack and kid friendly too! | Foodfaithfitness.com | @FoodFaitFit

Chocolate Pumpkin Muffins

Rich, chocolaty, and perfectly spiced—these Chocolate Pumpkin Muffins are a wholesome and delicious treat you can enjoy anytime!

Nutrition

Calories: 82kcal | Carbohydrates: 19g | Protein: 3g | Fat: 2g | Saturated Fat: 1g | Sodium: 194mg | Fiber: 2g | Sugar: 5g
Paleo Egg Muffins with Maple Almond Sweet Potato Noodles and Bacon - A sweet and savory, portable breakfast or snack that is gluten free, protein packed, low carb and perfect for busy mornings! | Foodfaithfitness.com | @FoodFaithFit

Egg Muffins With Maple Sweet Potato Noodles, Bacon, And Almond Butter (Paleo + High protein + Low Carb)

Try these portable, protein-packed Egg Muffins With Sweet Potato Noodles, using this simple breakfast or brunch recipe!

Nutrition

Calories: 154kcal | Carbohydrates: 14g | Protein: 7g | Fat: 7g | Saturated Fat: 1g | Sodium: 80mg | Fiber: 2g | Sugar: 6g

Caramel Stuffed Paleo Banana Bread Muffins

Grain-free, gluten-free, and paleo-friendly, these Caramel-Stuffed Banana Bread Muffins are your new weeknight treat, portable breakfast, or midday snack!

Nutrition

Calories: 196kcal | Carbohydrates: 20g | Protein: 5g | Fat: 11g | Saturated Fat: 4g | Sodium: 185mg | Fiber: 4g | Sugar: 11g

Chocolate Egg Muffins Stuffed With Cookie Dough

These protein-packed chocolate egg muffins are stuffed with a cookie dough center, making for an impossibly tasty treat to enjoy anytime you have a sweet craving.

Nutrition

Calories: 153kcal | Carbohydrates: 22.2g | Protein: 6.2g | Fat: 4.7g | Saturated Fat: 2.4g | Sodium: 118.3mg | Fiber: 1.3g | Sugar: 16.8g
Taylor Kiser Profile Picture

About Taylor KiserHealthy Food

Taylor Kiser is a Certified Personal Trainer and Nutrition Coach and a lover of health and fitness. A follower of Christ. Recipe developer. Photographer. Obsessed with cookie dough, pink & leopard print.

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Published: Sep 30, 2023 | Updated: Feb 27, 2026

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