• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar

Food Faith Fitness

Nourishing your body, mind and soul

  • About
    • About
    • Editorial Policy
    • FFF Book
  • Recipes
    • By Course
      • Breakfast
      • Main Dish
      • Side Dish
      • Appetizers
      • Desserts
      • Snacks
      • Smoothies/Drinks
    • By Type
      • Salad
      • Soup
      • Slow Cooker
      • Pasta
      • Sandwich/Wraps
      • Casseroles
      • Holiday
    • By Protein
      • Poultry
      • Pork & Beef
      • Seafood
      • Meatless
    • By Diet
      • Gluten Free
      • Dairy Free
      • Low Carb
      • Vegetarian
      • Egg free
      • Nut Free
      • Keto
      • Paleo
      • Vegan
      • Whole30
    • All Recipes
  • Faith
  • Breakfast
  • Main Dish
  • Side Dish
  • Desserts
  • Smoothies
  • Appetizers
  • Reader Favs

Homemade Greek Yogurt Gluten-Free Mac And Cheese Recipe

gf ef nf
4.78 from 9 votes
Taylor KiserBy Taylor Kiser
Taylor Kiser
Taylor Kiser Founder of Food Faith Fitness

Taylor Kiser is a Certified Personal Trainer and Nutrition Coach and a lover of health and fitness. A follower of Christ. Recipe developer. Photographer. Obsessed with cookie dough, pink & leop…

Expertise: Healthy Food View all posts →
Jump to Recipe

This Homemade Greek Yogurt Gluten-Free Mac And Cheese Recipe is packed with protein and has a pizza twist!

Homemade Gluten Free Greek Yogurt Mac and Cheese Recipe - this homemade gluten free macaroni and cheese recipe tastes like pizza but is healthy, gluten free and protein packed thanks to Greek yogurt! A quick and easy dinner for both kids and adults! | #Foodfaithfitness | #Glutenfree #Greekyogurt #Healthy #Pizza #Kidfriendly

Alright, let me get this out of the way first—this recipe is chaos in the best possible way. It combines two ultimate comfort foods (pizza and mac and cheese) into one bowl of high-protein, gluten-free, creamy deliciousness, and somehow it all just works. The mozzarella, Parmesan, roasted tomatoes, and turkey pepperoni come together with that gooey, cheesy texture you want from mac and cheese, but the flavor is full-on pizza night. You’re going to love it. Your kids are going to love it. Anyone you serve it to is going to love it.

I’ve made this more times than I can count, mostly because it just hits when I need something fast, warm, and completely satisfying. The roasted tomatoes add depth that jarred sauce just can’t, and the yogurt is the sleeper hit. It gives the sauce a creamy finish without making it heavy, and it adds a little protein boost while it’s at it. Just stir it in at the end, and you’re golden.

If I’m being honest, the pepperoni is probably my favorite part. You roast it until the edges get a little crispy, and it adds that salty, chewy bite that pulls everything together. This dish is one of those weird hybrids that sounds slightly unhinged on paper, but once you taste it, you’re already planning your next batch.

Homemade Gluten Free Greek Yogurt Mac and Cheese Recipe - this homemade mac and cheese recipe tastes like pizza but is healthy, gluten free and protein packed thanks to Greek yogurt! A quick and easy dinner for both kids and adults! | #Foodfaithfitness | #Glutenfree #Greekyogurt #Healthy #Pizza #Kidfriendly

Is Homemade Greek Yogurt Gluten-Free Mac And Cheese Recipe Healthy?

This recipe has some healthy swaps that make it healthier than your standard mac and cheese. The Greek yogurt adds protein and calcium without the need for heavy cream, and turkey pepperoni is lower in fat than traditional pepperoni. There’s olive oil instead of butter, which means less saturated fat, and the tomatoes contain potassium, vitamin C, and lycopene.

That said, you still have noodles and plenty of cheese, so I’d still recommend enjoying this dish in moderation. If you can help it.

Gluten Free Greek Yogurt Pizza Mac and Cheese - this homemade mac and cheese recipe tastes like pizza but is healthy, gluten free and protein packed thanks to Greek yogurt! A quick and easy dinner for both kids and adults! | #Foodfaithfitness | #Glutenfree #Greekyogurt #Healthy #Pizza #Kidfriendly

Getting The Pizza Flavor Without Sauce

You may have noticed that this recipe skips pizza sauce completely, and that’s intentional. I have found that by roasting the tomatoes with a little oil, Italian seasoning, and garlic salt, you get a richer, more concentrated flavor that outshines pizza sauce. It also helps you avoid all the added sugar, salt, and preservatives you find in the jarred stuff. So, skip the sauce on this one. Fresh is best!

Gluten Free Greek Yogurt Pizza Mac and Cheese - this homemade mac and cheese recipe tastes like pizza but is healthy, gluten free and protein packed thanks to Greek yogurt! A quick and easy dinner for both kids and adults! | #Foodfaithfitness | #Glutenfree #Greekyogurt #Healthy #Pizza #Kidfriendly

How Do I Store Leftovers?

Let everything cool completely, then transfer it to an airtight container and refrigerate. It’ll stay good for up to 4 days. You can also freeze it in individual portions by wrapping it tightly or using freezer-safe containers. Thaw overnight in the fridge, then reheat gently on the stovetop.

Serving Suggestions

This dish is certainly hearty and filling enough to have all by itself, but sometimes, you want to dress it up a bit! Got room on your plate for some side dishes? I like having this mac and cheese with a side of Roasted Green Beans or Sautéed Broccolini. And for true pizzeria vibes, you could whip up a batch of Garlic Toast or an Antipasto Salad.

Recipe

Homemade Greek Yogurt Gluten-Free Mac And Cheese Recipe

4.78 from 9 votes
Print Rate
Serves: 4 People
Prep: 10 minutes minutes
Cook: 20 minutes minutes
Total: 30 minutes minutes

Ingredients

  • 4 Roma tomatoes sliced
  • 1/2 cup turkey pepperoni about 30 slices
  • 2 teaspoons olive oil
  • 2 teaspoons Italian seasoning, divided
  • 1 1/2 teaspoons garlic salt divided
  • pepper
  • 8 ounces gluten-free macaroni noodles
  • 6 ounces mozzarella cheese grated, about 2 cups
  • 2 ounces Parmesan cheese grated, about 2/3 cups
  • 1/2 cup 2% plain Greek yogurt

Instructions

  • Preheat your oven to 400°F.
  • In a medium bowl, toss together the sliced tomato, turkey pepperoni, olive oil, 1 teaspoon of Italian seasoning, and 1/2 teaspoon of garlic salt. Spread in one layer on a baking sheet and sprinkle with a pinch of pepper.
  • Bake until the tomatoes begin to soften, about 13-15 minutes. Note that the pepperoni will only take 6-7 minutes to crisp up, so check them often and remove from the pan when done, continuing to cook the tomatoes until soft. Set aside.
  • Bring a large pot of salted water to a boil, and cook the pasta according the package directions. Drain the cooked pasta and reserve 1/2 cup of the cooking water.
  • Transfer the cooked pasta back into the pot and stir in 1/3 cup of the pasta water. Then add in the cheese, a little bit at a time. Stir between each addition until the cheese is fully melted, and then continue to add the cheese.
  • Once the cheese is melted, stir in the Greek yogurt until creamy and well mixed. Stir in the remaining 1 teaspoon of garlic salt and Italian seasoning, and season with a pinch of pepper. If it’s too thick, add the remaining pasta water.
  • Stir in the cooked tomatoes and pepperoni and enjoy.

Nutrition Info:

Calories: 472kcal (24%) Carbohydrates: 54.3g (18%) Protein: 27.2g (54%) Fat: 16.9g (26%) Saturated Fat: 7.9g (49%) Sodium: 1211mg (53%) Fiber: 2g (8%) Sugar: 7.7g (9%)

Nutrition Disclaimer

Nutrition information are estimates only and may vary based on the specific brands, ingredients, and portion sizes you use. This data is provided for informational purposes only.

Author: Taylor Kiser
Course:Dinner, Main Course
Cuisine:American
Share your creationsTag @foodfaithfit and hashtag it #foodfaithfitness so I can see what you made!
Rate It
Taylor Kiser Profile Picture

About Taylor KiserHealthy Food

Taylor Kiser is a Certified Personal Trainer and Nutrition Coach and a lover of health and fitness. A follower of Christ. Recipe developer. Photographer. Obsessed with cookie dough, pink & leopard print.

Reader Interactions

Amanda BC

✓Reviewed by Amanda BCItalian-American & Ukrainian-American Cuisine, Regional Dishes

Published: Aug 14, 2018 | Updated: Feb 23, 2026
4.78 from 9 votes (9 ratings without comment)

Leave a Comment Cancel reply

Have a question? Use the form below to submit your question or comment. I love hearing from you and seeing what you made!

rate this recipe:




Cinnamon Roll Keto Protein Pancakes - This EASY, low carb, gluten free protein pancakes recipe is going to be your new favorite breakfast! Great for kids and adults and packed with 23g of protein! Who doesn't want to wake up to healthy cinnamon rolls?! | #Foodfaithfitness | #Keto #Lowcarb #Glutenfree #Healthy #Pancakes
Previous Post
Cinnamon Roll Protein Pancakes
35 Gluten Free Healthy Snacks for Kids - All 35 of these kid friendly, gluten free and healthy snacks recipes are quick, easy and great for lunchboxes or busy afternoons! Even adults will love these recipes! | #Foodfaithfitness | #Glutenfree #Healthy #Snacks #Kidfriendly 
Next Post
35 Gluten Free Healthy Snacks for Kids

Primary Sidebar

food faith fitness sidebar
Welcome

to Food Faith Fitness

If simple, vibrant, and exceptionally enticing recipes are your thing, then you’ve certainly come to the right place! We live and breathe all things culinary.

Our Story

Let's Connect

Check our latest recipes!
Back to Top
  • About
  • Contact
  • Privacy
  • Terms
  • Disclosure
Food Faith Fitness is part of Waywith.

Rate This Recipe

Your vote:




Let us know what you thought of this recipe:

This worked exactly as written, thanks!
My family loved this!
Thank you for sharing this recipe

Or write in your own words:

A rating is required
A name is required
An email is required

Recipe Ratings without Comment

Something went wrong. Please try again.