• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar

Food Faith Fitness

Nourishing your body, mind and soul

  • About
    • About
    • Editorial Policy
    • FFF Book
  • Recipes
    • By Course
      • Breakfast
      • Main Dish
      • Side Dish
      • Appetizers
      • Desserts
      • Snacks
      • Smoothies/Drinks
    • By Type
      • Salad
      • Soup
      • Slow Cooker
      • Pasta
      • Sandwich/Wraps
      • Casseroles
      • Holiday
    • By Protein
      • Poultry
      • Pork & Beef
      • Seafood
      • Meatless
    • By Diet
      • Gluten Free
      • Dairy Free
      • Low Carb
      • Vegetarian
      • Egg free
      • Nut Free
      • Keto
      • Paleo
      • Vegan
      • Whole30
    • All Recipes
  • Faith
  • Breakfast
  • Main Dish
  • Side Dish
  • Desserts
  • Smoothies
  • Appetizers
  • Reader Favs

Gluten-Free, Paleo Lemon Poppy Seed Muffins

gf df vg p
5 from 3 votes
Taylor KiserBy Taylor Kiser
Taylor Kiser
Taylor Kiser Founder of Food Faith Fitness

Taylor Kiser is a Certified Personal Trainer and Nutrition Coach and a lover of health and fitness. A follower of Christ. Recipe developer. Photographer. Obsessed with cookie dough, pink & leop…

Expertise: Healthy Food View all posts →
Jump to Recipe

These Gluten-Free, Paleo Lemon Poppy Seed Muffins are light, fluffy, and perfectly sweet!

Hands pulling apart a gluten-free, paleo lemon poppy seed muffin, with whole muffins and lemon wedges.

Real talk: Everybody knows that lemon poppy seed anything just hits different. It’s a flavor combo that feels both nostalgic and fresh, and I have so many fond memories of enjoying the two together. Walk into any bakery, and what always looks like the best option in the case? The lemon poppy seed loaf with that perfectly crackly white glaze. So why did it take me so many years of blogging to finally make a lemon poppy seed muffin recipe? Honestly, no clue.

I’ve made some pretty out-there muffin flavors without a second thought—oatmeal carrot with garam masala or sweet potato with tahini, just to name a few. But somehow, the most classic, simple flavors just slipped right by me. Until now. I finally remembered what makes lemon poppy seed so good: that balance of sweet and tangy wrapped up in a soft, fluffy bite. One taste of these muffins, and I knew I’d made the right call in revisiting an old favorite.

I didn’t want to stop at a classic muffin recipe, though. I wanted to whip up a healthier take, so these muffins would be more accessible to people on stricter diets. What I’ve ended up with is something gluten-free, dairy-free, and Paleo—just the thing to have on hand when you’re craving something a little sweet but not too overbearing. Trust me, they’re going to make your whole kitchen smell like sunshine.

Gluten-free, paleo lemon poppy seed muffins with lemon wedges and scattered poppy seeds.

Are These Gluten-Free, Paleo Lemon Poppy Seed Muffins Healthy?

These muffins can be considered a healthier take on your classic lemon poppy seed muffin, though they are still definitely treats. The almond flour contains protein, healthy fats, and vitamin E, while coconut flour adds a nice dose of fiber. I also stuck with honey and coconut sugar as the sweeteners here for an all-natural, unrefined alternative to white sugar. But they’re still technically sugar—so moderation is key.

Lemon And Poppy Seeds Are A Classic Combo

Lemon and poppy seeds just work together. Poppy seeds have a rich, nutty flavor to them that perfectly complements the bright, acidic sweetness of the lemon. The seeds also add a subtle crunch element to whatever they’re added to, which is such a fun contrast with the soft, fluffy texture of the muffin itself. All in all, this dynamic duo is one of my favorites, and I’ll never get tired of playing with these flavors in my kitchen!

Two gluten-free, paleo lemon poppy seed muffins, one with a bite taken out, showing the texture.

How Do I Store Leftovers?

Muffin recipes are fantastic because you can make some for now and some for later! I recommend storing the muffins in the fridge in an airtight container for up to 1 week. If you want them to last longer, pop them in an airtight container or a zip-top freezer bag, and they will keep for up to 3 months.

Serving Suggestions

Like I said, I’m a total sucker for all things lemon poppy seed. If you’d like to join me in my obsession, you could whip up a batch of Lemon Poppy Seed Cake Bars or Baked Donuts With Lemon And Poppy Seeds to satisfy your craving. You could also add poppy seeds to a classic Lemon Pound Cake to dress it up a bit more!

Recipe

Gluten-Free, Paleo Lemon Poppy Seed Muffins

5 from 3 votes
Print Rate
Serves: 9 Muffins
Gluten-free paleo lemon poppy seed muffins, one with a bite taken.
Prep: 5 minutes minutes
Cook: 25 minutes minutes
Total: 30 minutes minutes

Ingredients

  • 2 1/2 cups almond flour 250 grams
  • 1/4 cup coconut flour 20 grams
  • 1/4 cup coconut sugar
  • 1 tablespoon poppy seeds
  • 1 1/2 teaspoons baking powder
  • 1/2 teaspoon salt
  • 1/2 teaspoon baking soda
  • 1/2 cup fresh lemon juice
  • 1/2 cup honey
  • 2 large eggs
  • 2 tablespoons coconut oil, melted

Instructions

  • In a large bowl, whisk together the almond flour, coconut flour, sugar, poppy seeds, baking powder, salt, and baking soda. Whisk all the remaining wet ingredients together in a separate bowl. Next, add the wet ingredients to the dry and whisk until well combined.
  • Preheat your oven to 350 degrees Fahrenheit and line a muffin pan with liners, or use a silicone pan.
  • Using an ice cream scoop, fill 9 cavities evenly with batter. Place the pan in the oven and bake until a toothpick inserted into the center of a muffin comes out clean, about 22-25 minutes.
  • Allow the muffins to cool completely in the pan. Run a knife around the edges and gently remove, then enjoy.

Nutrition Info:

Calories: 319kcal (16%) Carbohydrates: 31.4g (10%) Protein: 8.8g (18%) Fat: 20.4g (31%) Saturated Fat: 4.1g (26%) Sodium: 297.3mg (13%) Fiber: 4.9g (20%) Sugar: 22.3g (25%)

Nutrition Disclaimer

Nutrition information are estimates only and may vary based on the specific brands, ingredients, and portion sizes you use. This data is provided for informational purposes only.

Author: Taylor Kiser
Course:Breakfast
Cuisine:American
Share your creationsTag @foodfaithfit and hashtag it #foodfaithfitness so I can see what you made!
Rate It

 

Taylor Kiser Profile Picture

About Taylor KiserHealthy Food

Taylor Kiser is a Certified Personal Trainer and Nutrition Coach and a lover of health and fitness. A follower of Christ. Recipe developer. Photographer. Obsessed with cookie dough, pink & leopard print.

Reader Interactions

Amanda BC

✓Reviewed by Amanda BCItalian-American & Ukrainian-American Cuisine, Regional Dishes

Published: Oct 10, 2024 | Updated: Mar 3, 2026
5 from 3 votes (3 ratings without comment)

Leave a Comment Cancel reply

Have a question? Use the form below to submit your question or comment. I love hearing from you and seeing what you made!

rate this recipe:




Pomegranate and Dark Chocolate Chunk Ice Cream {Lower Fat + Gluten Free} - Food Faith Fitness
Previous Post
Healthy Ice Cream Recipe with Chocolate and Pomegranate (Low-Fat + Gluten-Free)
6 Ingredient Paleo Cranberry Almond Cookies - These easy, gluten free cranberry almond paleo cookies are so chewy and delicious! They're a healthier cookie for the Holidays with only 6 ingredients! | Foodfaithfitness.com |
Next Post
Cranberry Paleo Gluten-Free Almond Butter Cookies

Primary Sidebar

food faith fitness sidebar
Welcome

to Food Faith Fitness

If simple, vibrant, and exceptionally enticing recipes are your thing, then you’ve certainly come to the right place! We live and breathe all things culinary.

Our Story

Let's Connect

Check our latest recipes!
Back to Top
  • About
  • Contact
  • Privacy
  • Terms
  • Disclosure
Food Faith Fitness is part of Waywith.

Rate This Recipe

Your vote:




Let us know what you thought of this recipe:

This worked exactly as written, thanks!
My family loved this!
Thank you for sharing this recipe

Or write in your own words:

A rating is required
A name is required
An email is required

Recipe Ratings without Comment

Something went wrong. Please try again.